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Commit 1797bfcd authored by Quentin Kaci's avatar Quentin Kaci
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Integrate alpha tree and watershed hierarchy benchmarks into pipeline

parent f9da352b
Pipeline #28630 passed with stage
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bench/BMAlphaTree.cpp
View file @ 1797bfcd
......@@ -8,11 +8,10 @@
using image_t = mln::image2d<mln::rgb8>;
static const std::vector<std::string> bench_images = {"plane.png", "nature.png", "mountains.png", "hong_kong.png"};
static const std::vector<std::string> bench_images = {"Aerial_view_of_Olbia.jpg", "Space1_20MB.jpg"};
static const auto alphatree_vect_function = [](const image_t& input) {
mln::morpho::alphatree(input, mln::c4,
[](const auto& a, const auto& b) -> std::double_t { return mln::l2dist(a, b); });
mln::morpho::alphatree(input, mln::c4, [](const auto& a, const auto& b) -> double { return mln::l2dist(a, b); });
};
static const auto alphatree_hq_function = [](const image_t& input) {
......@@ -43,44 +42,24 @@ public:
};
BENCHMARK_F(BMAlphaTree, AlphatreePlaneVect)(benchmark::State& st)
BENCHMARK_F(BMAlphaTree, AlphatreeOlbiaVect)(benchmark::State& st)
{
this->run(st, alphatree_vect_function, 0);
}
BENCHMARK_F(BMAlphaTree, AlphatreePlaneHQ)(benchmark::State& st)
BENCHMARK_F(BMAlphaTree, AlphatreeOlbiaHQ)(benchmark::State& st)
{
this->run(st, alphatree_hq_function, 0);
}
BENCHMARK_F(BMAlphaTree, AlphatreeNatureVect)(benchmark::State& st)
BENCHMARK_F(BMAlphaTree, AlphatreeSpaceVect)(benchmark::State& st)
{
this->run(st, alphatree_vect_function, 1);
}
BENCHMARK_F(BMAlphaTree, AlphatreeNatureHQ)(benchmark::State& st)
BENCHMARK_F(BMAlphaTree, AlphatreeSpaceHQ)(benchmark::State& st)
{
this->run(st, alphatree_hq_function, 1);
}
BENCHMARK_F(BMAlphaTree, AlphatreeMountainsVect)(benchmark::State& st)
{
this->run(st, alphatree_vect_function, 2);
}
BENCHMARK_F(BMAlphaTree, AlphatreeMountainsHQ)(benchmark::State& st)
{
this->run(st, alphatree_hq_function, 2);
}
BENCHMARK_F(BMAlphaTree, AlphatreeHongKongVect)(benchmark::State& st)
{
this->run(st, alphatree_vect_function, 3);
}
BENCHMARK_F(BMAlphaTree, AlphatreeHongKongHQ)(benchmark::State& st)
{
this->run(st, alphatree_hq_function, 3);
}
BENCHMARK_MAIN();
\ No newline at end of file
bench/BMWatershedHierarchy.cpp
View file @ 1797bfcd
#include <mln/core/image/view/cast.hpp>
#include <mln/io/imread.hpp>
#include <mln/io/imsave.hpp>
#include <benchmark/benchmark.h>
#include <mln/accu/accumulators/count.hpp>
#include <mln/accu/accumulators/mean.hpp>
#include <mln/core/colors.hpp>
#include <mln/core/image/ndimage.hpp>
#include <mln/core/neighborhood/c4.hpp>
#include <mln/io/imread.hpp>
#include <mln/morpho/watershed_hierarchy.hpp>
using image_t = mln::image2d<mln::rgb8>;
static const std::vector<std::string> bench_images = {"plane.png", "nature.png", "mountains.png", "hong_kong.png"};
static const std::vector<std::string> bench_images = {"Aerial_view_of_Olbia.jpg", "Space1_20MB.jpg"};
static const auto watershed_hierarchy_by_area_function = [](const image_t& input) {
mln::morpho::watershed_hierarchy(input, mln::accu::features::count<>(), mln::c4,
[](const auto& a, const auto& b) -> std::float_t { return mln::l2dist(a, b); });
mln::morpho::watershed_hierarchy(
input,
[](auto tree, auto nm) -> std::vector<size_t> {
return tree.compute_attribute_on_points(nm, mln::accu::features::count<>());
},
mln::c4, [](const auto& a, const auto& b) -> std::float_t { return mln::l2dist(a, b); });
};
static const auto hierarchical_segmentation_function = [](const image_t& input) {
auto [tree, node_map] =
mln::morpho::watershed_hierarchy(input, mln::accu::features::count<>(), mln::c4,
[](const auto& a, const auto& b) -> std::float_t { return mln::l2dist(a, b); });
auto [tree, node_map] = mln::morpho::watershed_hierarchy(
input,
[](auto tree, auto nm) -> std::vector<size_t> {
return tree.compute_attribute_on_points(nm, mln::accu::features::count<>());
},
mln::c4, [](const auto& a, const auto& b) -> std::float_t { return mln::l2dist(a, b); });
auto mean = tree.compute_attribute_on_values(node_map, input, mln::accu::accumulators::mean<mln::rgb8>());
......@@ -50,49 +53,29 @@ public:
callback(inputs[i]);
}
std::vector<image_t> inputs;
static std::vector<image_t> inputs;
};
std::vector<image_t> BMWatershedHierarchy::inputs;
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaPlane)(benchmark::State& st)
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaOlbia)(benchmark::State& st)
{
this->run(st, watershed_hierarchy_by_area_function, 0);
}
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationPlane)(benchmark::State& st)
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationOlbia)(benchmark::State& st)
{
this->run(st, hierarchical_segmentation_function, 0);
}
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaNature)(benchmark::State& st)
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaSpace)(benchmark::State& st)
{
this->run(st, watershed_hierarchy_by_area_function, 1);
}
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationNature)(benchmark::State& st)
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationSpace)(benchmark::State& st)
{
this->run(st, hierarchical_segmentation_function, 1);
}
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaMountains)(benchmark::State& st)
{
this->run(st, watershed_hierarchy_by_area_function, 2);
}
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationMountains)(benchmark::State& st)
{
this->run(st, hierarchical_segmentation_function, 2);
}
BENCHMARK_F(BMWatershedHierarchy, WatershedHierarchyAreaHongKong)(benchmark::State& st)
{
this->run(st, watershed_hierarchy_by_area_function, 3);
}
BENCHMARK_F(BMWatershedHierarchy, HierarchicalSegmentationHongKong)(benchmark::State& st)
{
this->run(st, hierarchical_segmentation_function, 3);
}
BENCHMARK_MAIN();
\ No newline at end of file
bench/CMakeLists.txt
View file @ 1797bfcd
......@@ -64,5 +64,7 @@ add_benchmark(BMMorphers BMMorphers.cpp BMMorphers_main.cpp)
add_benchmark(BMReference_Linear BMReference_Linear.cpp BMReference_Linear_Reversed.cpp BMReference_Linear_main.cpp)
add_benchmark(BMReference_Neighborhood BMReference_Neighborhood_main.cpp)
add_benchmark(BMBufferPrimitives BMBufferPrimitives.cpp)
add_benchmark(BMAlphaTree BMAlphaTree.cpp)
add_benchmark(BMWatershedHierarchy BMWatershedHierarchy.cpp)
ExternalData_Add_Target(fetch-external-data)
doc/source/snippets/CMakeLists.txt
View file @ 1797bfcd
......@@ -6,20 +6,20 @@ set(PYLENE_IMAGE_DIR ${PROJECT_SOURCE_DIR}/img)
set(DOCUMENTATION_IMAGES "")
function(add_image EXECUTABLE INPUT)
# add_image(EXECUTABLE INPUT OUTPUT1 [ [OUTPUT2 [OUTPUT3 ...] ] ]
set(outputs "")
foreach (output IN LISTS ARGN)
set(output "${DOCUMENTATION_IMAGE_DIR}/${output}")
list(APPEND outputs "${output}")
list(APPEND DOCUMENTATION_IMAGES "${output}")
endforeach ()
set(DOCUMENTATION_IMAGES ${DOCUMENTATION_IMAGES} PARENT_SCOPE)
add_custom_command(OUTPUT ${outputs}
COMMAND ${EXECUTABLE} ${INPUT} ${outputs}
COMMAND_EXPAND_LISTS
)
# add_image(EXECUTABLE INPUT OUTPUT1 [ [OUTPUT2 [OUTPUT3 ...] ] ]
set(outputs "")
foreach (output IN LISTS ARGN)
set(output "${DOCUMENTATION_IMAGE_DIR}/${output}")
list(APPEND outputs "${output}")
list(APPEND DOCUMENTATION_IMAGES "${output}")
endforeach ()
set(DOCUMENTATION_IMAGES ${DOCUMENTATION_IMAGES} PARENT_SCOPE)
add_custom_command(OUTPUT ${outputs}
COMMAND ${EXECUTABLE} ${INPUT} ${outputs}
COMMAND_EXPAND_LISTS
)
endfunction()
add_image("intro-1" "${DOCUMENTATION_IMAGE_DIR}/Olena-c6gradi.png" intro-1-1.png)
......@@ -40,18 +40,18 @@ add_image("cdt;4" "${DOCUMENTATION_IMAGE_DIR}/F.png" F-5-7-11.png)
add_image("staff_lines" "${DOCUMENTATION_IMAGE_DIR}/staff_lines.pbm"
morpho_hitormiss_1.png morpho_hitormiss_2.png staff_lines_markers.png morpho_reconstruction_1.png morpho_reconstruction_2.png)
morpho_hitormiss_1.png morpho_hitormiss_2.png staff_lines_markers.png morpho_reconstruction_1.png morpho_reconstruction_2.png)
add_image("reconstruction"
"${DOCUMENTATION_IMAGE_DIR}/blobs2_binary.png"
morpho_reconstruction_dilated.png
morpho_reconstruction_markers.png
morpho_reconstruction_rec.png
morpho_reconstruction_out.png)
"${DOCUMENTATION_IMAGE_DIR}/blobs2_binary.png"
morpho_reconstruction_dilated.png
morpho_reconstruction_markers.png
morpho_reconstruction_rec.png
morpho_reconstruction_out.png)
add_image("area_filter"
"${DOCUMENTATION_IMAGE_DIR}/blobs2_binary.png"
morpho_area_filter_dilated.png
morpho_area_filter_opening.png
morpho_area_filter_out.png)
"${DOCUMENTATION_IMAGE_DIR}/blobs2_binary.png"
morpho_area_filter_dilated.png
morpho_area_filter_opening.png
morpho_area_filter_out.png)
add_image("blobs_watershed" "${DOCUMENTATION_IMAGE_DIR}/blobs_binary.png" blobs_distance_transform.png blobs_segmentation.png)
......@@ -63,7 +63,7 @@ add_image("watershed_hierarchy_example" "${PYLENE_IMAGE_DIR}/lena.ppm" watershed
add_image("watershed_hierarchy_example" "${PYLENE_IMAGE_DIR}/lena.pgm" watershed_hierarchy_area_gray.png)
add_custom_target(build-images
DEPENDS "${DOCUMENTATION_IMAGES}")
DEPENDS "${DOCUMENTATION_IMAGES}")
add_library(doc-lib lut.cpp)
target_link_libraries(doc-lib Pylene::Pylene)
......@@ -88,7 +88,7 @@ target_compile_definitions(erosion-cli PRIVATE BOOST_ALL_NO_LIB)
# for program_options, need to separate CONAN and regular FindBoost
if (TARGET Boost::program_options)
target_link_libraries(erosion-cli PRIVATE Boost::program_options)
target_link_libraries(erosion-cli PRIVATE Boost::program_options)
elseif (TARGET Boost::Boost)
target_link_libraries(erosion-cli PRIVATE Boost::Boost)
endif ()
\ No newline at end of file
target_link_libraries(erosion-cli PRIVATE Boost::Boost)
endif()
\ No newline at end of file
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