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Commit e3baf254 authored by Edwin Carlinet's avatar Edwin Carlinet
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Merge branch 'development/maxtrees-integration' into 'development/ranges' 

Port Maxtree and ToS Algorithm

See merge request !86
parents e21324e4 2d509995
Pipeline #15968 failed with stages
in 102 minutes and 2 seconds
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CMakeLists.txt
View file @ e3baf254
......@@ -14,7 +14,6 @@ find_package(Boost 1.58 COMPONENTS program_options REQUIRED)
find_package(FreeImage REQUIRED)
find_package(TBB)
find_package(Qt4)
find_package(range-v3 REQUIRED)
# CONFIGURE COMPILER LAUNCHERS
......
bench/BMAlgorithms.cpp
View file @ e3baf254
......@@ -357,16 +357,17 @@ int accumulate_accu(const mln::experimental::image2d<uint8_t>& ima)
return mln::accumulate(ima, mln::accu::features::sum<int>());
}
using point_t = mln::image_point_t<mln::experimental::image2d<uint8_t>>;
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<uint8_t>& ima)
std::vector<point_t> sort_points(const mln::experimental::image2d<uint8_t>& ima)
{
return mln::experimental::sort_points(ima);
}
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<int>& ima)
std::vector<point_t> sort_points(const mln::experimental::image2d<int>& ima)
{
return mln::experimental::sort_points(ima);
}
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<mln::rgb8>& ima)
std::vector<point_t> sort_points(const mln::experimental::image2d<mln::rgb8>& ima)
{
return mln::experimental::sort_points(ima, mln::lexicographicalorder_less<mln::rgb8>());
}
bench/BMAlgorithms_main.cpp
View file @ e3baf254
......@@ -54,9 +54,11 @@ int accumulate_baseline(const mln::experimental::image2d<uint8_t>& ima);
int accumulate_accu(const mln::experimental::image2d<uint8_t>& ima);
int accumulate(const mln::experimental::image2d<uint8_t>& ima);
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<uint8_t>& ima);
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<int>& ima);
std::vector<mln::experimental::point2d> sort_points(const mln::experimental::image2d<mln::rgb8>& ima);
using point_t = mln::image_point_t<mln::experimental::image2d<uint8_t>>;
std::vector<point_t> sort_points(const mln::experimental::image2d<uint8_t>& ima);
std::vector<point_t> sort_points(const mln::experimental::image2d<int>& ima);
std::vector<point_t> sort_points(const mln::experimental::image2d<mln::rgb8>& ima);
class BMAlgorithms : public benchmark::Fixture
{
......
bench/BMMorphoMaxtree.cpp 0 → 100644
View file @ e3baf254
#include <mln/core/algorithm/transform.hpp>
#include <mln/core/colors.hpp>
#include <mln/core/image/experimental/ndimage.hpp>
#include <mln/core/neighborhood/c4.hpp>
#include <mln/core/neighb2d.hpp>
#include <mln/io/experimental/imread.hpp>
#include <mln/morpho/experimental/maxtree.hpp>
#include <mln/morpho/maxtree/maxtree.hpp>
#include <benchmark/benchmark.h>
#include <fixtures/ImagePath/image_path.hpp>
class BMMorpho : public benchmark::Fixture
{
public:
using image_t = mln::experimental::image2d<uint8_t>;
using image_ref_t = mln::image2d<uint8_t>;
BMMorpho()
{
if (!g_loaded)
{
const char* filename = "Aerial_view_of_Olbia.jpg";
mln::experimental::image2d<mln::rgb8> input;
mln::io::experimental::imread(filename, input);
g_input = mln::transform(input, [](mln::rgb8 x) -> uint8_t { return x[0]; });
g_loaded = true;
}
m_input = g_input;
int nr = m_input.width();
int nc = m_input.height();
mln::resize(m_output, m_input);
m_size = nr * nc;
m_input.to(m_input_, false);
m_output.to(m_output_, false);
}
void run(benchmark::State& st, std::function<void(const image_t& input)> callback)
{
for (auto _ : st)
callback(m_input);
st.SetBytesProcessed(int64_t(st.iterations()) * int64_t(m_size));
}
void run2(benchmark::State& st, std::function<void(const image_ref_t& input)> callback)
{
for (auto _ : st)
callback(m_input_);
st.SetBytesProcessed(int64_t(st.iterations()) * int64_t(m_size));
}
protected:
static bool g_loaded;
static mln::experimental::image2d<uint8_t> g_input;
mln::experimental::image2d<uint8_t> m_input;
mln::experimental::image2d<uint8_t> m_output;
std::size_t m_size;
mln::image2d<uint8_t> m_input_;
mln::image2d<uint8_t> m_output_;
};
bool BMMorpho::g_loaded = false;
mln::experimental::image2d<uint8_t> BMMorpho::g_input;
BENCHMARK_F(BMMorpho, MaxtreeNew)(benchmark::State& st)
{
auto f = [](const image_t& input) { mln::morpho::experimental::maxtree(input, mln::experimental::c4); };
this->run(st, f);
}
BENCHMARK_F(BMMorpho, MaxtreeRef)(benchmark::State& st)
{
auto f = [](const image_ref_t& input) { mln::morpho::maxtree_indexes(input, mln::c4); };
this->run2(st, f);
}
BENCHMARK_MAIN();
bench/BMMorphoTos.cpp 0 → 100644
View file @ e3baf254
#include <mln/core/algorithm/transform.hpp>
#include <mln/core/colors.hpp>
#include <mln/core/image/experimental/ndimage.hpp>
#include <mln/core/neighborhood/c4.hpp>
#include <mln/core/neighb2d.hpp>
#include <mln/io/experimental/imread.hpp>
#include <mln/morpho/experimental/tos.hpp>
#include <mln/morpho/tos/tos.hpp>
#include <benchmark/benchmark.h>
#include <fixtures/ImagePath/image_path.hpp>
class BMMorpho : public benchmark::Fixture
{
public:
using image_t = mln::experimental::image2d<uint8_t>;
using image_ref_t = mln::image2d<uint8_t>;
BMMorpho()
{
if (!g_loaded)
{
const char* filename = "Aerial_view_of_Olbia.jpg";
mln::experimental::image2d<mln::rgb8> input;
mln::io::experimental::imread(filename, input);
g_input = mln::transform(input, [](mln::rgb8 x) -> uint8_t { return x[0]; });
g_loaded = true;
}
m_input = g_input;
int nr = m_input.width();
int nc = m_input.height();
mln::resize(m_output, m_input);
m_size = nr * nc;
m_input.to(m_input_, false);
m_output.to(m_output_, false);
}
void run(benchmark::State& st, std::function<void(const image_t& input)> callback)
{
for (auto _ : st)
callback(m_input);
st.SetBytesProcessed(int64_t(st.iterations()) * int64_t(m_size));
}
void run2(benchmark::State& st, std::function<void(const image_ref_t& input)> callback)
{
for (auto _ : st)
callback(m_input_);
st.SetBytesProcessed(int64_t(st.iterations()) * int64_t(m_size));
}
protected:
static bool g_loaded;
static mln::experimental::image2d<uint8_t> g_input;
mln::experimental::image2d<uint8_t> m_input;
mln::experimental::image2d<uint8_t> m_output;
std::size_t m_size;
mln::image2d<uint8_t> m_input_;
mln::image2d<uint8_t> m_output_;
};
bool BMMorpho::g_loaded = false;
mln::experimental::image2d<uint8_t> BMMorpho::g_input;
BENCHMARK_F(BMMorpho, ToSNew)(benchmark::State& st)
{
auto f = [](const image_t& input) { mln::morpho::experimental::tos(input, input.domain().tl()); };
this->run(st, f);
}
BENCHMARK_F(BMMorpho, ToSRef)(benchmark::State& st)
{
auto f = [](const image_ref_t& input) { mln::morpho::tos(input); };
this->run2(st, f);
}
BENCHMARK_MAIN();
bench/CMakeLists.txt
View file @ e3baf254
......@@ -66,6 +66,8 @@ set_source_files_properties(${src_standalone} PROPERTIES COMPILE_FLAGS ${STANDAL
add_benchmark(BMAlgorithms BMAlgorithms.cpp BMAlgorithms_main.cpp)
add_benchmark(BMNeighborhood BMNeighborhood.cpp BMNeighborhood_main.cpp)
add_benchmark(BMRotation BMRotation.cpp)
add_benchmark(BMMorphoMaxtree BMMorphoMaxtree.cpp)
add_benchmark(BMMorphoTos BMMorphoTos.cpp)
add_benchmark(BMMorphoBase BMMorphoBase.cpp)
add_benchmark(BMMorphoBaseRef BMMorphoBaseRef.cpp)
add_benchmark(BMMorphers BMMorphers.cpp BMMorphers_main.cpp)
......
conanfile.py
View file @ e3baf254
......@@ -15,7 +15,7 @@ class Pylene(ConanFile):
default_options = ("gtest=False", "benchmark=False", "freeimage=False", "boost=False",
# TO REMOVE once docker image is fixed with the buildfarm profile updated
"boost_program_options=False")
generators = "cmake_paths"
generators = [ "cmake_paths", "cmake_find_package" ]
exports_sources = ["pylene/*", "cmake/*", "CMakeLists.txt", "LICENSE"]
def get_cmake_config(self):
......@@ -41,7 +41,7 @@ class Pylene(ConanFile):
def requirements(self):
self.requires("range-v3/0.5.0@lrde/patched")
self.requires("cmcstl2/head@lrde/testing")
self.requires("fmt/5.3.0@bincrafters/stable")
self.requires("fmt/[>=6.0 <6.1]")
if self.options.freeimage:
self.requires("freeimage/3.18.0@dutiona/stable")
......
doc/source/core/algorithm/sort.rst
View file @ e3baf254
......@@ -6,26 +6,24 @@ Include :file:`<mln/core/algorithm/sort.hpp>`
.. cpp:namespace:: mln
#. .. cpp:function:: void sort_points(InputImage ima, OutputRange&& rng)
#. .. cpp:function:: void sort_points(InputImage ima, OutputRange&& rng, Compare cmp)
void sort_points(InputImage ima, OutputRange&& rng, Compare cmp)
#. .. cpp:function:: std::vector<image_point_t<InputImage>> sort_points(InputImage ima, OutputRange&& rng)
#. .. cpp:function:: std::vector<image_point_t<InputImage>> sort_points(InputImage ima, OutputRange&& rng, Compare cmp)
std::vector<image_point_t<InputImage>> sort_points(InputImage ima, OutputRange&& rng, Compare cmp)
#. .. cpp:function:: void sort_indexes(InputImage ima, OutputRange&& rng)
#. .. cpp:function:: void sort_indexes(InputImage ima, OutputRange&& rng, Compare cmp)
#. .. cpp:function:: std::vector<image_point_t<InputImage>> \
sort_indexes(InputImage ima, OutputRange&& rng)
#. .. cpp:function:: std::vector<image_point_t<InputImage>> \
sort_indexes(InputImage ima, OutputRange&& rng, Compare cmp)
void sort_indexes(InputImage ima, OutputRange&& rng, Compare cmp)
#. .. cpp:function:: std::vector<image_point_t<InputImage>> sort_indexes(InputImage ima, OutputRange&& rng)
std::vector<image_point_t<InputImage>> sort_indexes(InputImage ima, OutputRange&& rng, Compare cmp)
Sort the points (versions 1-4) or the indexes (versions 5-8) of an image w.r.t their values.
Sort the points (versions 1-2) or the indexes (versions 3-4) of an image w.r.t their values.
:param ima: The source image
:param rng: (versions 1,2,5,6) The destination range where points or indexes are going to be stored.
:param cmp: (versions 2,4,6,8) The comparison function between values
:param rng: (versions 1,3) The destination range where points or indexes are going to be stored.
:param cmp: (optional) The comparison function between values
:tparam InputImage: A model of :cpp:concept:`InputImage`
:tparam OutputRange: A model of :cpp:concept:`OutputRange`
:tparam Compare: A model of :cpp:concept:`Compare`
:return: (versions 3,4,7,8) A `std::vector` with the points or the indexes sorted.
:return: (versions 2-4) A `std::vector` with the points or the indexes sorted.
......
doc/source/figures/core/box.svg
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doc/source/figures/core/ndpoint.svg
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doc/source/figures/core/uml.tikz 0 → 100644
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\tikzset{
class/.style={draw, fill=LightYellow},
template/.style={label={[mTemplateNodeStyle]north east:#1}},
realization/.style={-Latex[open]},
%%
mTemplateNodeStyle/.style={fill=white,draw,dashed,font={\tt\small}, inner sep=2pt, anchor=center}
}
\ No newline at end of file
doc/source/figures/morpho/simpleimage-maxtree.svg 0 → 100644
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doc/source/figures/morpho/simpleimage-maxtree.tex 0 → 100644
View file @ e3baf254
\documentclass[tikz, border=0 3pt 0 3pt]{standalone}
\begin{document}
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% \draw[gray, dashed] (-1.75,-\x) -- (1.75,-\x);
% }
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[level distance=1cm, sibling distance=.75cm]
child { node[white, draw=black, fill=black!40] {A, F} [sibling distance=.75cm]
child[level distance=2cm] { node[fill=white] {O} }
child { node[fill=black!10] {C} }
}
child[missing]
child[level distance=2cm] { node[fill=black!10] {D} }
child[level distance=2cm] { node[fill=black!10] {E} }
;
\end{tikzpicture}
\end{document}
\ No newline at end of file
doc/source/figures/morpho/simpleimage-mintree.svg 0 → 100644
View file @ e3baf254
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doc/source/figures/morpho/simpleimage-mintree.tex 0 → 100644
View file @ e3baf254
\documentclass[tikz, border=0 3pt 0 3pt]{standalone}
\begin{document}
\begin{tikzpicture}[scale=0.9]
\tikzset{every node/.style={draw=black, rectangle}}
\path[use as bounding box] (-1.5,0.2) rectangle (1.5,-3.2);
% \foreach \x in {0,1,...,3} {
% \draw[gray, dashed] (-1.5,-\x) -- (1.5,-\x);
% }
\node[fill=white] {O} [level distance=1cm]
child { node[fill=black!10] {C, D, E}
child { node[white,draw=black,fill=black!40] (A) {A}
child { node[white,draw=black,fill=black!80] {B} }
}
child { node[white,draw=black,fill=black!40] {F} }
}
;
\end{tikzpicture}
\end{document}
\ No newline at end of file
doc/source/figures/morpho/simpleimage-nodemap.svg 0 → 100644
View file @ e3baf254
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doc/source/figures/morpho/simpleimage-nodemap.tex 0 → 100644
View file @ e3baf254
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