* spot/parseaut/parseaut.yy: Add a diagnostic.
* tests/core/parseaut.test: Test it.
* NEWS: Document it.

* spot/twaalgos/sbacc.cc: Here.
* tests/core/parseaut.test, tests/python/automata.ipynb: Adjust.
* tests/core/sbacc.test: Likewise + more tests.
* NEWS: Mention it.

* spot/parseaut/parseaut.yy: Here.
* tests/core/parseaut.test: Test it.
* NEWS: Mention it.

This is so that we can have -d as an alias for --dot everywhere.

* bin/randaut.cc: Rename -d as -e.
* NEWS: Mention the change.
* doc/org/autfilt.org, doc/org/oaut.org, doc/org/randaut.org,
tests/core/parseaut.test, tests/core/readsave.test: Adjust.

* tests/: Rename as...
* tests/core/: ... this.
* python/tests/: Rename as...
* tests/python/: ... this.
* python/tests/run.in: Move as...
* tests/run.in: This, and adjust.
* tests/Makefile.am: Adjust to run both core and python tests.
* configure.ac, README, debian/python3-spot.examples, debian/rules,
doc/org/tut.org, python/Makefile.am, spot/ltsmin/Makefile.am,
spot/ltsmin/kripke.test, spot/sanity/ipynb.test: Adjust.

* spot/bin/: Move...
* bin/: ... here.
* spot/tests/: Move...
* tests/: ... here.
* Makefile.am, README, bench/stutter/Makefile.am,
bench/stutter/stutter_invariance_formulas.cc, doc/Makefile.am,
configure.ac, debian/rules, spot/Makefile.am, spot/ltsmin/Makefile.am,
spot/ltsmin/kripke.test, spot/sanity/style.test, python/tests/run.in:
Adjust.

* NEWS: Mention the change.
* src/: Rename as ...
* spot/: ... this, adjust all headers to include <spot/...> instead of
"...", and adjust all Makefile.am to search headers from the top-level
directory.
* HACKING: Add conventions about #include.
* spot/sanity/style.test: Add a few more grep to catch cases
that do not follow these conventions.
* .gitignore, Makefile.am, README, bench/stutter/Makefile.am,
bench/stutter/stutter_invariance_formulas.cc,
bench/stutter/stutter_invariance_randomgraph.cc, configure.ac,
debian/rules, doc/Doxyfile.in, doc/Makefile.am,
doc/org/.dir-locals.el.in, doc/org/g++wrap.in, doc/org/init.el.in,
doc/org/tut01.org, doc/org/tut02.org, doc/org/tut03.org,
doc/org/tut10.org, doc/org/tut20.org, doc/org/tut21.org,
doc/org/tut22.org, doc/org/tut30.org, iface/ltsmin/Makefile.am,
iface/ltsmin/kripke.test, iface/ltsmin/ltsmin.cc,
iface/ltsmin/ltsmin.hh, iface/ltsmin/modelcheck.cc,
wrap/python/Makefile.am, wrap/python/ajax/spotcgi.in,
wrap/python/spot_impl.i, wrap/python/tests/ltl2tgba.py,
wrap/python/tests/randgen.py, wrap/python/tests/run.in: Adjust.

As discussed at https://github.com/adl/hoaf/issues/56

* src/parseaut/scanaut.ll: Allow dots.
* src/tests/parseaut.test: Test it.
* NEWS: Mention it.

Fixes #4 and fixes #5.

* NEWS: Mention the change.
* src/kripkeparse/: Delete.
* README, src/Makefile.am, configure.ac: Adjust.
* src/kripke/kripkeexplicit.cc, src/kripke/kripkeexplicit.hh,
src/kripke/kripkeprint.cc, src/kripke/kripkeprint.hh: Delete.
* src/kripke/kripkegraph.hh: New file.
* src/kripke/Makefile.am: Adjust.
* src/parseaut/parseaut.yy, src/parseaut/public.hh: Add
an option to read kripke structures.
* src/tests/bad_parsing.test: Delete.
* src/tests/Makefile.am: Adjust.
* src/tests/kripke.test, src/tests/parse_print_test.cc: Rewrite.
* src/tests/ikwiad.cc, src/tests/parseaut.test,
iface/ltsmin/modelcheck.cc, wrap/python/spot_impl.i: Adjust.

This fixes #119.

* doc/org/tut21.org, doc/org/hoa.org, NEWS: Document it.
* src/twa/twa.hh: Support it in automata.
* src/twaalgos/hoa.cc, src/parseaut/parseaut.yy: Add I/O support.
* src/twaalgos/minimize.cc, src/twaalgos/totgba.cc: Set weak
automata on output.
* src/tests/complement.test, src/tests/parseaut.test,
src/tests/readsave.test, src/tests/remfin.test, src/tests/sccsimpl.test,
src/tests/wdba2.test, wrap/python/tests/automata-io.ipynb: Adjust.

Fixes #114.

* src/parseaut/public.hh: Add support for a trust_hoa option.
* src/parseaut/parseaut.yy: If trust_hoa is set, recognize the
"inherently-weak" and "stutter-invariant" properties.
* src/bin/common_conv.cc, src/bin/common_conv.hh (read_automaton):
Move...
* src/bin/common_hoaread.cc, src/bin/common_hoaread.hh: ... in this
new file, that also handle the --trust-hoa option.
* src/bin/Makefile.am: Add them.
* src/bin/autfilt.cc, src/bin/dstar2tgba.cc, src/bin/ltlcross.cc,
src/bin/ltldo.cc: Use them.
* src/tests/parseaut.test, src/tests/ltldo.test: Adjust, and test
--trust-hoa=no.
* src/tests/complement.test, src/tests/prodor.test,
src/tests/sbacc.test: Adjust.
* wrap/python/spot.py (automata): Add option trust_hoa.
* NEWS: Update.

This occured when parsing the HOA automaton generated by Rabinizer3 for
a very long LTL formula with many nested U.  State labels could easily
be more than 40k characters.

* src/parseaut/scanaut.ll: Fix that.
* src/tests/parseaut.test: New test case.
* NEWS: Mention the fix.

* src/parseaut/parseaut.yy: Add and the a check_version() function.
* src/tests/parseaut.test: Test it.
* NEWS: Mention it.

Flatten the formula ltl::formula hiearchy into a single ltl::vnode that
has an enumerator to distinguish the types of node, and a common
interface to access children, update reference counts, etc.  The
ltl::formula class is now a thin wrapper around an ltl::vnode pointer to
keep track of reference counts automatically.  Visitor are not used
anymore; we now have map() and traversor() methods that are more
concise.

This basically fixes #43, but should be followed by some fine tuning
that should now be localized to the formula.hh and formula.cc files.

Some statistics about this patch.  I started working on it on Sep 9, had
a first compiling version two weeks later on Sep 22, and it then took 5
days to fixes the ~70 distincts bugs that were introduced during the
conversion.  About 13200 lines were modified, and one third of those
were removed.

* src/ltlast/formula.cc, src/ltlast/formula.hh: Complete rewrite,
including what was in separate nearby files.
* src/ltlast/allnodes.hh, src/ltlast/atomic_prop.cc,
src/ltlast/atomic_prop.hh, src/ltlast/binop.cc, src/ltlast/binop.hh,
src/ltlast/bunop.cc, src/ltlast/bunop.hh, src/ltlast/constant.cc,
src/ltlast/constant.hh, src/ltlast/multop.cc, src/ltlast/multop.hh,
src/ltlast/unop.cc, src/ltlast/unop.hh, src/ltlvisit/dump.cc,
src/ltlvisit/dump.hh, src/ltlast/predecl.hh: Delete these files.  Their
feature have been merged in formula.hh and formula.cc.
* src/ltlast/visitor.hh, src/ltlvisit/clone.cc, src/ltlvisit/clone.hh,
src/ltlvisit/dump.hh, src/ltlvisit/postfix.cc, src/ltlvisit/postfix.hh:
Delete these files, as we do not use visitors anymore.
* bench/stutter/stutter_invariance_formulas.cc,
bench/stutter/stutter_invariance_randomgraph.cc, doc/org/tut01.org,
doc/org/tut02.org, doc/org/tut10.org, doc/org/tut22.org,
iface/ltsmin/ltsmin.cc, iface/ltsmin/ltsmin.hh,
iface/ltsmin/modelcheck.cc, src/bin/autfilt.cc,
src/bin/common_aoutput.cc, src/bin/common_aoutput.hh,
src/bin/common_finput.cc, src/bin/common_finput.hh,
src/bin/common_output.cc, src/bin/common_output.hh,
src/bin/common_trans.cc, src/bin/common_trans.hh, src/bin/dstar2tgba.cc,
src/bin/genltl.cc, src/bin/ltl2tgba.cc, src/bin/ltl2tgta.cc,
src/bin/ltlcross.cc, src/bin/ltldo.cc, src/bin/ltlfilt.cc,
src/bin/ltlgrind.cc, src/bin/randaut.cc, src/bin/randltl.cc,
src/kripke/kripkeexplicit.cc, src/kripke/kripkeexplicit.hh,
src/kripkeparse/kripkeparse.yy, src/ltlast/Makefile.am,
src/ltlenv/declenv.cc, src/ltlenv/declenv.hh, src/ltlenv/defaultenv.cc,
src/ltlenv/defaultenv.hh, src/ltlenv/environment.hh,
src/ltlparse/ltlparse.yy, src/ltlparse/public.hh,
src/ltlvisit/Makefile.am, src/ltlvisit/apcollect.cc,
src/ltlvisit/apcollect.hh, src/ltlvisit/contain.cc,
src/ltlvisit/contain.hh, src/ltlvisit/dot.cc, src/ltlvisit/dot.hh,
src/ltlvisit/exclusive.cc, src/ltlvisit/exclusive.hh,
src/ltlvisit/length.cc, src/ltlvisit/length.hh, src/ltlvisit/mark.cc,
src/ltlvisit/mark.hh, src/ltlvisit/mutation.cc,
src/ltlvisit/mutation.hh, src/ltlvisit/nenoform.cc,
src/ltlvisit/nenoform.hh, src/ltlvisit/print.cc, src/ltlvisit/print.hh,
src/ltlvisit/randomltl.cc, src/ltlvisit/randomltl.hh,
src/ltlvisit/relabel.cc, src/ltlvisit/relabel.hh,
src/ltlvisit/remove_x.cc, src/ltlvisit/remove_x.hh,
src/ltlvisit/simpfg.cc, src/ltlvisit/simpfg.hh,
src/ltlvisit/simplify.cc, src/ltlvisit/simplify.hh, src/ltlvisit/snf.cc,
src/ltlvisit/snf.hh, src/ltlvisit/unabbrev.cc, src/ltlvisit/unabbrev.hh,
src/parseaut/parseaut.yy, src/ta/taexplicit.cc, src/ta/tgtaexplicit.cc,
src/taalgos/minimize.cc, src/taalgos/tgba2ta.cc, src/tests/bare.test,
src/tests/checkpsl.cc, src/tests/checkta.cc,
src/tests/complementation.cc, src/tests/consterm.cc,
src/tests/emptchk.cc, src/tests/equalsf.cc, src/tests/ikwiad.cc,
src/tests/isop.test, src/tests/kind.cc, src/tests/length.cc,
src/tests/ltldo.test, src/tests/ltlfilt.test, src/tests/ltlgrind.test,
src/tests/ltlprod.cc, src/tests/ltlrel.cc,
src/tests/parse_print_test.cc, src/tests/parseaut.test,
src/tests/parseerr.test, src/tests/randtgba.cc, src/tests/readltl.cc,
src/tests/reduc.cc, src/tests/syntimpl.cc, src/tests/taatgba.cc,
src/tests/tostring.cc, src/tests/twagraph.cc, src/tests/utf8.test,
src/twa/acc.cc, src/twa/bdddict.cc, src/twa/bdddict.hh,
src/twa/bddprint.cc, src/twa/formula2bdd.cc, src/twa/formula2bdd.hh,
src/twa/taatgba.cc, src/twa/taatgba.hh, src/twa/twa.cc, src/twa/twa.hh
src/twa/twagraph.cc, src/twa/twagraph.hh, src/twa/twasafracomplement.cc,
src/twaalgos/compsusp.cc, src/twaalgos/compsusp.hh,
src/twaalgos/dtgbasat.cc, src/twaalgos/hoa.cc, src/twaalgos/lbtt.cc,
src/twaalgos/ltl2taa.cc, src/twaalgos/ltl2taa.hh,
src/twaalgos/ltl2tgba_fm.cc, src/twaalgos/ltl2tgba_fm.hh,
src/twaalgos/minimize.cc, src/twaalgos/minimize.hh,
src/twaalgos/neverclaim.cc, src/twaalgos/postproc.cc,
src/twaalgos/postproc.hh, src/twaalgos/powerset.cc,
src/twaalgos/powerset.hh, src/twaalgos/randomgraph.cc,
src/twaalgos/remprop.cc, src/twaalgos/remprop.hh, src/twaalgos/stats.cc,
src/twaalgos/stats.hh, src/twaalgos/stutter.cc, src/twaalgos/stutter.hh,
src/twaalgos/translate.cc, src/twaalgos/translate.hh,
wrap/python/ajax/spotcgi.in, wrap/python/spot.py,
wrap/python/spot_impl.i, wrap/python/Makefile.am,
wrap/python/tests/automata-io.ipynb, wrap/python/tests/formulas.ipynb,
wrap/python/tests/ltl2tgba.py, wrap/python/tests/ltlparse.py,
wrap/python/tests/ltlsimple.py, wrap/python/tests/randltl.ipynb: Adjust
to use the new interface.
* src/sanity/style.test: Accept more C++11 patterns.
* NEWS: Mention the change.

* src/parseaut/parseaut.yy: Keep track of named states.
* src/tests/parseaut.test: Test it.

* src/parseaut/parseaut.yy: Do not call YYABORT on errors
in headers.
* src/tests/parseaut.test: Test this.

* src/parseaut/parseaut.yy: Here.
* src/tests/parseaut.test: More tests.

Note that the parser is still not able to reader multiple dstar
automata.

* src/dstarparse/: Delete.
* configure.ac, src/Makefile.am, README: Adjust.
* src/parseaut/parseaut.yy, src/parseaut/scanaut.ll: Merge in the
dstarparser rules.
* src/bin/common_trans.cc, src/bin/common_trans.hh,
src/bin/dstar2tgba.cc, src/bin/ltlcross.cc, src/bin/ltldo.cc,
src/tests/ikwiad.cc: Adjust usage.
* src/tests/parseaut.test: Adjust expected output.

* src/parseaut/parseaut.yy: Here.
* src/tests/parseaut.test: Adjust.

Fixes #99.

* src/tests/parseaut.test: New test case.
* src/twa/acc.cc (is_generalized_rabin): Fix detection
of Fin(0)|Fin(1)|Fin(2)&Inf(3).
* NEWS: Mention it.

Fixes #23.

* src/tests/ltl2tgba.cc: Rename as ...
* src/tests/ikwiad.cc: ... this.
* src/tests/Makefile.am, src/tests/babiak.test, src/tests/checkta.cc,
src/tests/complementation.test, src/tests/cycles.test,
src/tests/dbacomp.test, src/tests/degendet.test,
src/tests/degenid.test, src/tests/det.test, src/tests/dfs.test,
src/tests/dstar.test, src/tests/dupexp.test, src/tests/emptchke.test,
src/tests/kv.test, src/tests/ltl2neverclaim-lbtt.test,
src/tests/ltl2neverclaim.test, src/tests/ltl2tgba.test,
src/tests/ltlcounter.test, src/tests/ltlcross.test,
src/tests/neverclaimread.test, src/tests/obligation.test,
src/tests/parseaut.test, src/tests/randaut.test,
src/tests/randpsl.test, src/tests/renault.test,
src/tests/satmin2.test, src/tests/sccsimpl.test, src/tests/sim2.test,
src/tests/simdet.test, src/tests/spotlbtt.test, src/tests/wdba.test,
src/tests/wdba2.test, bench/emptchk/README, bench/emptchk/defs.in,
bench/ltlclasses/run, bench/ltlcounter/run, bench/wdba/run: Adjust.

Because this parser is not specific to HOA anymore.

* src/hoaparse/Makefile.am, src/hoaparse/fmterror.cc,
src/hoaparse/hoaparse.yy, src/hoaparse/parsedecl.hh,
src/parseaut/public.hh, src/hoaparse/hoascan.ll,
src/tests/hoaparse.test: Rename to...
* src/parseaut/Makefile.am, src/parseaut/fmterror.cc,
src/parseaut/parseaut.yy, src/parseaut/parsedecl.hh,
src/hoaparse/public.hh, src/parseaut/scanaut.ll,
src/tests/parseaut.test: ... these, and also adjust the name internally.
For instance hoa_aut_ptr is now parsed_aut_ptr; hoa_stream_parser is now
automaton_stream_parser, and hoa_parse() has become parse_aut().
* NEWS, README, configure.ac, doc/org/tut20.org, src/Makefile.am,
src/bin/autfilt.cc, src/bin/common_aoutput.cc,
src/bin/common_aoutput.hh, src/bin/common_conv.cc,
src/bin/ltlcross.cc, src/bin/ltldo.cc, src/tests/Makefile.am,
src/tests/complementation.cc, src/tests/ltl2tgba.cc,
src/tests/readsave.test, wrap/python/ajax/spot.in,
wrap/python/spot.py, wrap/python/spot_impl.i,
wrap/python/tests/automata-io.ipynb, wrap/python/tests/parsetgba.py:
Adjust.

Fixes #90.

* src/hoaparse/hoaparse.yy: Here.
* src/tests/hoaparse.test: Test it.

Fixes #84.

* src/twaalgos/hoa.cc: Detect and output the colored property.
* src/tests/hoaparse.test, src/tests/satmin2.test: Update.

According to https://github.com/adl/hoaf/issues/46

* src/twa/acc.cc (parity): Adjust generation.
* src/tests/hoaparse.test, wrap/python/tests/accparse.ipynb:
Adjust existing test cases.
* wrap/python/tests/accparse2.py: New test cases.

* src/twa/acc.cc: Allow duplicate and reordered pairs.  Also recognize
the single-pair cases.
* src/twaalgos/hoa.cc: When Rabin or Streett is detected, canonicalize
the Acceptance: line.
* src/tests/hoaparse.test, wrap/python/tests/accparse2.py: More tests.
* src/tests/sbacc.test: Adjust.

It has two modes: strict or not.  In strict mode (tested in
hoaparse.test), the acceptance formula has to match exactly the one
given in the HOA spec.  In non-strict mode (tested in accparse2.py)
any equivalent formula is accepted.

* src/twa/acc.cc, src/twa/acc.hh (acc_cond::is_parity): New method.
* src/twaalgos/hoa.cc: Use it.
* src/tests/hoaparse.test: Test it.
* wrap/python/spot_impl.i: Bind it.
* wrap/python/tests/accparse2.py: New file.
* wrap/python/tests/Makefile.am: Add it.

So far the HOA output would emit an acc-name only
for generalized-Buchi or inferior types (Buchi, all).
It now knows about none, co-Buchi, generalized-co-Buchi,
Rabin, Streett, and generalized-Rabin as well.

* src/twa/acc.cc, src/twa/acc.hh: Add detection code.
* src/twaalgos/hoa.cc: Use it.
* src/tests/remfin.test, src/tests/maskacc.test,
src/tests/complete.test, src/tests/sim3.test,
src/tests/ltl2dstar.test: Adjust tests.
* src/tests/hoaparse.test: Adjust and add more tests.

* src/hoaparse/hoaparse.yy: Do not check initial alternating state
number until we support alternation.
* src/tests/hoaparse.test: Add a test case.

* src/Makefile.am, README, configure.ac: update references.
* src/tgbatest/: rename as...
* src/tests/: ...this!

This was discussed in the comments of
https://github.com/adl/hoaf/issues/39

* src/hoaparse/hoaparse.yy: Rename defined_states as info_states
and keep additional information about states in this vector to
diagnose undefined states.
* src/tgbatest/hoaparse.test: Add a test case.

Sometimes, simplifying the acceptance condition (because it refers to
sets that do not appear in the automaton) cause more sets to be removed
from the acceptance condition, and therefore warrant another pass to
remove those sets from the automaton.

* src/tgbaalgos/cleanacc.cc: Here.
* src/tgbatest/hoaparse.test: Add a test case.

* src/hoaparse/hoaparse.yy: Make sure initial states are
declared.
* src/tgbatest/hoaparse.test: Test it.

... and show it in the HOA output.  Fixes #60.

* src/tgba/tgba.hh: Add is_stutter_invariant().
* src/tgbaalgos/hoa.cc: Print stutter-invariant
and inherently-weak.
* src/tgbaalgos/ltl2tgba_fm.cc: Set both.
* src/tgbaalgos/are_isomorphic.cc, src/tgbaalgos/complete.cc,
src/tgbaalgos/degen.cc, src/tgbaalgos/dtgbacomp.cc,
src/tgbaalgos/mask.cc, src/tgbaalgos/minimize.cc,
src/tgbaalgos/remfin.cc, src/tgbaalgos/sccfilter.cc,
src/tgbaalgos/simulation.cc, src/tgbaalgos/stutter.cc,
src/tgbatest/hoaparse.test, src/tgbatest/ltldo.test,
src/tgbatest/monitor.test, src/tgbatest/randomize.test,
src/tgbatest/remfin.test, src/tgbatest/sbacc.test: Adjust.

Fixes #59.

* src/tgbaalgos/hoa.cc: Add option i.
* src/bin/common_aoutput.cc, src/bin/dstar2tgba.cc,
src/tgbaalgos/hoa.hh: Document it.
* src/tgbatest/hoaparse.test: Test it.

* src/tgbaalgos/cleanacc.cc, src/tgbaalgos/cleanacc.hh: New file.
* src/tgbaalgos/Makefile.am: Add them.
* src/tgba/acc.hh, src/tgba/tgba.hh (get_acceptance): Return a
reference.
* src/bin/autfilt.cc: Add a --cleanup-acceptance option.
* src/tgbatest/hoaparse.test: Test it.

* src/tgba/acc.hh: Add creation and printing of generic acceptance
code.
* src/tgba/acc.cc: New file.
* src/tgba/Makefile.am: Add it.
* src/tgbatest/acc.cc: More tests.
* src/tgbatest/acc.test: Update.
* src/tgba/tgba.hh (set_acceptance, get_acceptance): New methods.
* src/tgba/tgbagraph.hh: Store acceptance code.
* src/hoaparse/hoaparse.yy: Read any acceptance.
* src/dstarparse/nsa2tgba.cc, src/ta/taexplicit.cc,
src/tgba/tgbaproduct.cc, src/tgba/tgbasafracomplement.cc,
src/tgbaalgos/degen.cc, src/tgbaalgos/hoa.cc,
src/tgbaalgos/ltl2taa.cc, src/tgbaalgos/ltl2tgba_fm.cc,
src/tgbaalgos/product.cc, src/tgbaalgos/stutter.cc,
src/tgbatest/hoaparse.test: Adjust.

Reported by Joachim Klein.

* src/hoaparse/hoaparse.yy: Add a std::set to keep track of duplicate
propositions.
* src/tgbatest/hoaparse.test: Test it.

* src/hoaparse/hoaparse.yy: Here.
* src/tgbatest/lbttparse.test: Add test cases.
* src/tgbatest/hoaparse.test: Adjust.

Report from Tomáš Babiak and František Blahoudek

See also https://github.com/adl/hoaf/issues/36

Also fix a typo in the handling of Fin(1)&Fin(!1) while we are at it.

* src/hoaparse/hoaparse.yy: Here.
* src/tgbatest/hoaparse.test: Add tests.