* doc/org/tut21.org: New file.
* doc/Makefile.am, doc/org/tut.org: Add it.

This addresses on item of #14.

* doc/org/tut20.org: New file.
* doc/Makefile.am: Add it.
* doc/org/tut.org: Link to it.
* doc/org/.dir-locals.el.in, doc/org/init.el.in: Fix some PATH
issues.

* doc/org/install.org: New file.
* doc/Makefile.am: Add it.
* doc/org/index.org: Link to it.
* doc/org/setup.org: Add macro for
various version numbers.
* doc/org/tools.org: Update version number.
* NEWS, README, bench/ltl2tgba/README, debian/control,
debian/copyright: Update URLs to website.

* doc/org/index.org, doc/org/tut.org: New files.
* doc/Makefile.am: Add them.
* doc/org/setup.org: Adjust HOME link.
* doc/org/tools.org: Adjust UP link.
* debian/spot-doc.doc-base: The root is now index.html.

This addresses one item in #14.

* doc/org/tut10.org: New file.
* doc/Makefile.am: Add it.
* src/twaalgos/translate.hh: Fix inclusion of types from
postprocessor.
* wrap/python/spot.py (translate): Fix typo in doc string.

This fixes #61, and addresses one item of #14.

* src/ltlvisit/relabel.hh: Use a map rather than a unordered_map,
because the Swig binding for unordered_map do not seem functional.
* wrap/python/spot_impl.i: Adjust.
* wrap/python/tests/relabel.py: New file.
* wrap/python/tests/Makefile.am: Add it.
* doc/org/tut02.org: New file.
* doc/Makefile.am: Add it.

The difficulty is not the example, but setting up org-mode to allow
Python and C++ example that use the local libraries, not those
installed system-wide.

* doc/org/.dir-locals.el: Rename as...
* doc/org/.dir-locals.el.in: ... this, so we can easily define
PYTHONPATH and other environment variables.
* doc/org/init.el.in: Enable C++, and make sure but Python
and C++ use the local libraries.
* doc/org/g++wrap.in, doc/org/tut01.org: New files.
* doc/Makefile.am, configure.ac: Adjust.
* wrap/python/spot.py (to_str): Take a parenth argument.

* doc/org/hoa.org: New file.
* doc/org/oaut.org, doc/org/tools.org: Link to it.
* doc/Makefile.am: Distribute it.

* src/bin/common_trans.cc, src/bin/common_trans.hh: New files,
extracted from...
* src/bin/ltlcross.cc: ... here, so that ltldo can use them.
* src/bin/ltldo.cc: New file.
* src/bin/Makefile.am: Adjust.
* src/bin/common_aoutput.cc, src/bin/common_aoutput.hh: Make
it possible to add new statistics.
* doc/org/ltldo.org: New file.
* doc/Makefile.am, doc/org/tools.org: Adjust.
* src/bin/man/ltldo.x: New file.
* src/bin/man/Makefile.am: Adjust.
* src/bin/man/ltlcross.x, src/bin/man/ltlfilt.x: Mention ltldo(1).
* src/tgbatest/ltldo.test, src/tgbatest/ltldo2.test: New files.
* src/tgbatest/Makefile.am: Add them.
* NEWS: Mention ltldo.

* doc/org/setup.org: New file.
* doc/Makefile.am: Distribute it.
* doc/org/autfilt.org, doc/org/csv.org, doc/org/dstar2tgba.org,
doc/org/genltl.org, doc/org/ioltl.org, doc/org/ltl2tgba.org,
doc/org/ltl2tgta.org, doc/org/ltlcross.org, doc/org/ltlfilt.org,
doc/org/ltlgrind.org, doc/org/oaut.org, doc/org/randaut.org,
doc/org/randltl.org, doc/org/satmin.org, doc/org/tools.org: Use
setup.org.

* doc/org/spot.css: New file.
* doc/Makefile.am: Distribute it.
* doc/org/init.el.in, doc/org/.dir-locals.el: Adjust links.

* doc/org/oaut.org: New file.
* doc/Makefile.am: Add it.
* doc/org/autfilt.org, doc/org/ltl2tgba.org, doc/org/randaut.org,
doc/org/tools.org: Link to it.

* NEWS: Mention these tools.
* doc/org/autfilt.org, doc/org/randaut.org: New files.
* doc/org/tools.org, doc/Makefile.am: Add them.

* doc/Makefile.am, src/ltltest/defs.in, src/ltltest/latex.test: Here.

* src/bin/common_output.cc, src/bin/common_output.hh:
(output_formula_checked, aut_stat_printer): New.
* src/bin/genltl.cc, src/bin/randltl.cc, src/bin/ltlfilt.cc: Call
output_formula_checked() instead of output_formula().
* src/bin/ltl2tgba.cc: Use aut_stat_printer and add option --csv-escape.
* doc/org/csv.org: New file to document CSV I/O.
* doc/Makefile.am: Add it.
* doc/org/ioltl.org, doc/org/ltlfilt.org, doc/org/ltl2tgba.org,
doc/org/tools.org: Link to csv.org

* doc/org/satmin.org, doc/org/satmin.tex: New files.
* doc/Makefile.am: Add them.
* doc/org/tools.org: Point to satmin.org.
* NEWS: Mention satmin.html.

* doc/org/dstar2tgba.org: New file.
* doc/org/tools.org: Link to it.
* doc/Makefile.am: Distribute it.
* NEWS: Mention the generated web page.

* doc/Makefile.am: Here.

* doc/org/init.el.in, doc/org/syntax.css: New files.
* configure.ac: Generate init.el from init.el.in, and check for
emacs.
* doc/Makefile.am: Build userdoc/ from org/ and distribute userdoc/.
* README: Mention org/ and userdoc/.

* doc/org/.dir-locals.el: New files.
* doc/Makefile.am (EXTRA_DIST): Distribute it.

* NEWS: Mention this.
* COPYING: Replace by GPL v3.
* src/sanity/style.test: Check files with the wrong license,
in case we forgot to update it during a merge.
* Makefile.am, bench/Makefile.am, bench/emptchk/Makefile.am,
bench/emptchk/defs.in, bench/emptchk/ltl-human.sh,
bench/emptchk/ltl-random.sh, bench/emptchk/pml-clserv.sh,
bench/emptchk/pml-eeaean.sh, bench/emptchk/pml2tgba.pl,
bench/ltl2tgba/big, bench/ltl2tgba/defs.in, bench/ltl2tgba/known,
bench/ltl2tgba/lbtt2csv.pl, bench/ltl2tgba/ltl2baw.in,
bench/ltl2tgba/parseout.pl, bench/ltl2tgba/small,
bench/ltlclasses/Makefile.am, bench/ltlclasses/defs.in,
bench/ltlclasses/run, bench/ltlcounter/Makefile.am,
bench/ltlcounter/defs.in, bench/ltlcounter/run,
bench/scc-stats/Makefile.am, bench/scc-stats/stats.cc,
bench/split-product/Makefile.am, bench/split-product/cutscc.cc,
bench/split-product/pml2tgba.pl, bench/wdba/Makefile.am,
bench/wdba/defs.in, bench/wdba/run, configure.ac, doc/Makefile.am,
doc/dot.in, doc/tl/Makefile.am, ifac...

* doc/tl/Makefile.am, doc/tl/tl.tex, doc/tl/tl.bib: New files.
* doc/Makefile.am (SUBDIRS): Recurse into tl/.
* configure.ac: Output doc/tl/Makefile
* README: Describe doc/tl/.

* doc/Doxyfile.in: Do not generate LaTeX output.
* doc/Makefile.am: Do not build spotref.pdf.
* NEWS, README: Adjust.

explicitly, otherwise the documentation is always built and
distcheck fails.

Doxygen only knows how to call dot with -Tpng, while using
-Tpng:gd produces pictures that are 10 times smaller.  Use a
simple wrapper around dot to simplify this.

* doc/dot.in: New file, that wrap the system's dot and replace
-Tpng by -Tpng:gd.
* doc/Makefile.am ($(srcdir)/stamp): Depend on dot.
* doc/Doxyfile.in: Update to 1.6.2.
(DOT_PATH): Set to @srcdir@ to use doc/dot instead of the
system's dot.
* configure.ac: Find the absolute path of dot, and generate
the doc/dot script.

src/ltlast/constant.hh, src/ltlast/formula.hh,
src/ltlast/multop.hh, src/ltlast/refformula.hh,
src/ltlast/unop.hh, src/ltlast/visitor.hh, src/ltlenv/declenv.hh,
src/ltlenv/defaultenv.hh, src/ltlenv/environment.hh,
src/ltlparse/public.hh, src/ltlvisit/apcollect.hh,
src/ltlvisit/basicreduce.hh, src/ltlvisit/clone.hh,
src/ltlvisit/destroy.hh, src/ltlvisit/dotty.hh,
src/ltlvisit/dump.hh, src/ltlvisit/length.hh,
src/ltlvisit/lunabbrev.hh, src/ltlvisit/nenoform.hh: Add Doxygen
groups for LTL algorithms and types.
* doc/Makefile.am (fast-doc): New target.

* doc/Makefile.am (dist_pkgdata_DATA): Add spot.tag.

* doc/Doxyfile.in (HTML_FOOTER): Use footer.html.
* doc/Makefile.am (EXTRA_DIST): Add footer.html.

documentation in $(srcdir) since it is distributed.
* doc/Doxyfile.in (HTML_OUTPUT): Likewise.  Upgrade to Doxygen 1.3.7.

* doc/Makefile.am ($(srcdir)/spotref.pdf): Do not assume spot.latex is
in the srcdir.

* Makefile.am, configure.ac, doc/Makefile.am, iface/Makefile.am,
iface/gspn/Makefile.am, iface/gspn/common.cc,
iface/gspn/common.hh, iface/gspn/dottyeesrg.cc,
iface/gspn/dottygspn.cc, iface/gspn/eesrg.cc, iface/gspn/eesrg.hh,
iface/gspn/gspn.cc, iface/gspn/gspn.hh, iface/gspn/ltlgspn.cc,
src/Makefile.am, src/ltlast/Makefile.am, src/ltlast/allnodes.hh,
src/ltlast/atomic_prop.cc, src/ltlast/atomic_prop.hh,
src/ltlast/binop.cc, src/ltlast/binop.hh, src/ltlast/constant.cc,
src/ltlast/constant.hh, src/ltlast/formula.cc,
src/ltlast/formula.hh, src/ltlast/multop.cc, src/ltlast/multop.hh,
src/ltlast/predecl.hh, src/ltlast/refformula.cc,
src/ltlast/refformula.hh, src/ltlast/unop.cc, src/ltlast/unop.hh,
src/ltlast/visitor.hh, src/ltlenv/Makefile.am,
src/ltlenv/defaultenv.cc, src/ltlenv/defaultenv.hh,
src/ltlenv/environment.hh, src/ltlparse/Makefile.am,
src/ltlparse/fmterror.cc, src/ltlparse/ltlparse.yy,
src/ltlparse/ltlscan.ll, src/ltlparse/parsedecl.hh,
src/ltlparse/public.hh, src/ltltest/Makefile.am,
src/ltltest/defs.in, src/ltltest/equals.cc,
src/ltltest/equals.test, src/ltltest/lunabbrev.test,
src/ltltest/nenoform.test, src/ltltest/parse.test,
src/ltltest/parseerr.test, src/ltltest/readltl.cc,
src/ltltest/tostring.cc, src/ltltest/tostring.test,
src/ltltest/tunabbrev.test, src/ltltest/tunenoform.test,
src/ltlvisit/Makefile.am, src/ltlvisit/clone.cc,
src/ltlvisit/clone.hh, src/ltlvisit/destroy.cc,
src/ltlvisit/destroy.hh, src/ltlvisit/dotty.cc,
src/ltlvisit/dotty.hh, src/ltlvisit/dump.cc, src/ltlvisit/dump.hh,
src/ltlvisit/lunabbrev.cc, src/ltlvisit/lunabbrev.hh,
src/ltlvisit/nenoform.cc, src/ltlvisit/nenoform.hh,
src/ltlvisit/postfix.cc, src/ltlvisit/postfix.hh,
src/ltlvisit/tostring.cc, src/ltlvisit/tostring.hh,
src/ltlvisit/tunabbrev.cc, src/ltlvisit/tunabbrev.hh,
src/misc/Makefile.am, src/misc/bddalloc.cc, src/misc/bddalloc.hh,
src/misc/bddlt.hh, src/misc/hash.hh, src/misc/minato.cc,
src/misc/minato.hh, src/misc/version.cc, src/misc/version.hh,
src/tgba/Makefile.am, src/tgba/bdddict.cc, src/tgba/bdddict.hh,
src/tgba/bddprint.cc, src/tgba/bddprint.hh, src/tgba/public.hh,
src/tgba/state.hh, src/tgba/statebdd.cc, src/tgba/statebdd.hh,
src/tgba/succiter.hh, src/tgba/succiterconcrete.cc,
src/tgba/succiterconcrete.hh, src/tgba/tgba.cc, src/tgba/tgba.hh,
src/tgba/tgbabddconcrete.cc, src/tgba/tgbabddconcrete.hh,
src/tgba/tgbabddconcretefactory.cc,
src/tgba/tgbabddconcretefactory.hh,
src/tgba/tgbabddconcreteproduct.cc,
src/tgba/tgbabddconcreteproduct.hh, src/tgba/tgbabddcoredata.cc,
src/tgba/tgbabddcoredata.hh, src/tgba/tgbabddfactory.hh,
src/tgba/tgbaexplicit.cc, src/tgba/tgbaexplicit.hh,
src/tgba/tgbaproduct.cc, src/tgba/tgbaproduct.hh,
src/tgba/tgbatba.cc, src/tgba/tgbatba.hh,
src/tgbaalgos/Makefile.am, src/tgbaalgos/dotty.cc,
src/tgbaalgos/dotty.hh, src/tgbaalgos/dupexp.cc,
src/tgbaalgos/dupexp.hh, src/tgbaalgos/emptinesscheck.cc,
src/tgbaalgos/emptinesscheck.hh, src/tgbaalgos/lbtt.cc,
src/tgbaalgos/lbtt.hh, src/tgbaalgos/ltl2tgba_fm.cc,
src/tgbaalgos/ltl2tgba_fm.hh, src/tgbaalgos/ltl2tgba_lacim.cc,
src/tgbaalgos/ltl2tgba_lacim.hh, src/tgbaalgos/magic.cc,
src/tgbaalgos/magic.hh, src/tgbaalgos/reachiter.cc,
src/tgbaalgos/reachiter.hh, src/tgbaalgos/save.cc,
src/tgbaalgos/save.hh, src/tgbaparse/Makefile.am,
src/tgbaparse/fmterror.cc, src/tgbaparse/parsedecl.hh,
src/tgbaparse/public.hh, src/tgbaparse/tgbaparse.yy,
src/tgbaparse/tgbascan.ll, src/tgbatest/Makefile.am,
src/tgbatest/bddprod.test, src/tgbatest/defs.in,
src/tgbatest/dupexp.test, src/tgbatest/emptchk.test,
src/tgbatest/emptchke.test, src/tgbatest/explicit.test,
src/tgbatest/explpro2.test, src/tgbatest/explpro3.test,
src/tgbatest/explprod.test, src/tgbatest/ltl2tgba.test,
src/tgbatest/ltlprod.test, src/tgbatest/mixprod.test,
src/tgbatest/readsave.test, src/tgbatest/spotlbtt.test,
src/tgbatest/tgbaread.test, src/tgbatest/tripprod.test,
wrap/Makefile.am, wrap/python/Makefile.am, wrap/python/buddy.i,
wrap/python/spot.i, wrap/python/cgi/Makefile.am,
wrap/python/cgi/ltl2tgba.in, wrap/python/tests/Makefile.am,
wrap/python/tests/bddnqueen.py, wrap/python/tests/interdep.py,
wrap/python/tests/ltl2tgba.py, wrap/python/tests/ltl2tgba.test,
wrap/python/tests/ltlparse.py, wrap/python/tests/ltlsimple.py,
wrap/python/tests/run.in: Add Copyright license.

$(srcdir).

* doc/Makefile.am (spotref.pdf): New rule.
(EXTRA_DIST): Add spotref.pdf.

* doc/Makefile.am (EXTRA_DIST): Add mainpage.dox.
* doc/Doxyfile.in (INPUT): Add @srcdir@/mainpage.dox

* src/ltlvisit/tostring.hh (to_string): Add doxygen comments.
* src/ltlast/multop.hh (multop::paircmp): Add doxygen comments.
* src/ltlvisit/postfix.hh: Typo.

or configure.ac changes.  Distribute the html doc.
* doc/Doxyfile.in (EXCLUDE_PATTERNS): Complete with
useless Bison classes.
(FILE_PATTERNS): Remove *.cc files.